Ruby (Adventures)/History/Em

In Verily Vanquishing Vileplume II, Ruby and Sapphire arrived at the in order to assist, the third Hoenn Pokédex holder, in protecting  from the armored man, Guile Hideout. After meeting Emerald, the boy ran off saying that he didn't need their help. In an attempt to befriend Emerald, Ruby and Sapphire competed in Battle Dome tournament. Ruby advanced to the semi-finals, but was defeated by Emerald. Afterward, Emerald got frustrated by their constant pestering that he had Ruby and Sapphire thrown out of the Battle Dome.

In A Cheeky Charizard Change-Up II, Ruby and Sapphire encountered, who noted Sapphire's connection to the Blue Orb. Finding Spenser's behavior suspicious, Ruby and Sapphire recorded their conversation with him on Ruby's Memory Lighter. In Standing in the Way with Starmie, Spenser revealed that Guile managed to catch Jirachi and fled with it to the. Ruby, Sapphire, Emerald, and all traveled to the Battle Tower in order to confront the man. After making their way into the area, they discovered that had been put under Guile's control.

In Facing Gulpin Is Hard to Swallow, Guile forced the Hoenn Pokédex holders and Noland to take the Battle Tower challenge in order to make it to him. The four battled through various Virtual Trainers before finally reaching the top floor, where Emerald faced off against Anabel. During the battle, arrived and used its Sight Sharing to relay a message from Spenser, who revealed that he came in contact with the Blue Orb in the past and gained the ability to detect others like him, which included Guile. With his identity exposed, Guile lifted his helmet, revealing himself to be Archie.

In The Final Battle I, Guile used Jirachi's wishing granting power to summon a giant Kyogre-shaped mass of seawater and had it flood the Battle Frontier. Ruby and the others were assisted by the Johto Pokédex holders, and, who revealed that their fellow Pokédex holder were turned to stone and the only way of reviving them was Jirachi. While Gold and Crystal kept the Kyogre monster busy, the Hoenn Pokédex holders trained to learn the Ultimate Moves,, , and. After they succeeded, Emerald managed to get Jirachi to grant his wish to turn the petried Pokédex holders back to normal.

In The Final Battle VII, the ten Pokédex holders gathered together for one final battle against Guile and his army of rental Pokémon. By utilizing a triple Hydro Cannon, Blast Burn, Frenzy Plant, and combination, the Kyogre sea monster was overloaded with energy and exploded, finally ending the conflict with Guile. In Epilogue, Ruby participated in a tournament between the Pokédex holders, which he lost at some point.